Different installation and running options (source code, bioconda or Docker).MAGeCK and associated softwares offer a range of functions meet the analys needs of different users, including: scMAGeCK, a computational model to identify genes associated with multiple expression phenotypes from CRISPR screening coupled with single-cell RNA sequencing data.MAGeCKFlute, an integrative analysis pipeline for pooled CRISPR functional genetic screens.MAGeCK-VISPR, a comprehensive quality control, analysis and visualization workflow for CRISPR/Cas9 screens.Genome Biology 15:554 (2014)īesides MAGeCK, we also developed the following softwares and algorithms: MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. The MAGeCK algorithm is described in the following paper: Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute, and is being actively updated by Wei Li lab from Children's National Medical Center. MAGeCK is developed by Wei Li and Han Xu from Dr. Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology.
ECRISPER WIKI CODE
Introduction Note: Try MAGeCK without code on Galaxy platform or Latch! ?